PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0010s0540.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 594aa    MW: 65461.7 Da    PI: 5.8929
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0010s0540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24127228199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt+ d +g  W++++iyr++++r++lt+GW++Fv+ ++L +gD+v
  SapurV1A.0010s0540.1.p 127 FSKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVADIHGVNWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSV 211
                             88*********************999****985444444..9********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF+  ++ ++e++++v+r+
  SapurV1A.0010s0540.1.p 212 VFM--RNLKGEMFIGVRRS 228
                             ***..5689999****986 PP

2Auxin_resp84.12.9e-28272356183
              Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+++a+++ +FevvY+Pra++ s+Fvv++e ve+al v +++GmR+km +etedss+ ++ +Gtv+++   d   W++S+Wr+L+
  SapurV1A.0010s0540.1.p 272 AVERAAKGLPFEVVYYPRAGWySDFVVRAEVVEAALCVFWTAGMRVKMTMETEDSSRMTWfQGTVSSTGLPDCGAWRGSPWRMLQ 356
                             678999*************9779************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-33118230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-29122235IPR015300DNA-binding pseudobarrel domain
PfamPF023626.3E-22127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605127229IPR003340B3 DNA binding domain
CDDcd100176.65E-20127227No hitNo description
SMARTSM010192.4E-20127229IPR003340B3 DNA binding domain
PfamPF065072.8E-26272356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPPPPQLTEL SRVDPRIWRA CAGSSVQVPA VNSRVYYFPQ GHFEQSSSST VPHPPFISNF  60
ALSKPSIPCQ ISAVDFLADP ITDEVFTRIL LIPLDNPSSN LPLSFVESCR SEGVNDVDDD  120
ESKILAFSKI LTPSDANNGG GFSVPRFCAD SIFPPLNYQA EPPVQTLTVA DIHGVNWDFR  180
HIYRGTPRRH LLTTGWSKFV NNKKLIAGDS VVFMRNLKGE MFIGVRRSVR FNNSARWREQ  240
ISDSGGEGKV KVEEGFSRSW RGRLSQEAVV EAVERAAKGL PFEVVYYPRA GWYSDFVVRA  300
EVVEAALCVF WTAGMRVKMT METEDSSRMT WFQGTVSSTG LPDCGAWRGS PWRMLQITWD  360
EPDALQNAKR VSPWQVEFVA TTLPLQDASP PMKKLRYPHD SGFLTNGELF FPMSDLTNSR  420
TGHINASMLN YSTFPAGMQG ARQDPFSTFS LSNFISENAS QVLGDKVSGN NLAPKMKRMP  480
SEMNISSLQS GDLSPDNQSS AHSFGEDFTG NRSFNPQKVG ISSIQLFGKI IHMNQPVENG  540
FDTVGFMDNG SKGCNETEGV NALELSLTSS YTELLNRIDV QCQSASAVGA CSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-671337751388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301020.20.0hypothetical protein POPTR_0002s09050g
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLB9GUH00.0B9GUH0_POPTR; Auxin response factor
STRINGPOPTR_0002s09050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-178auxin response factor 17